>To navigate to next ambiguity press button Stop Next. >In case you want to edit a base you can double click it and enter the new value (letter). MHRA 'CAP - Contig Assembly Program', All Acronyms, 19 December 2021, Bluebook All Acronyms, CAP - Contig Assembly Program (Dec. DNABaser removes low quality ends and vectors sequences (if you specify them, like explained before). CAP - Contig Assembly Program, All Acronyms, viewed December 19, 2021, MLA All Acronyms. Retrieved December 19, 2021, from Chicago All Acronyms. home/arwa/17_CTOT_Longitudinal/sunbeam/local/CAP3/cap3 /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/idba_ud/H20NegCtrl1_D/contig.fa &> /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/log/cap3/H20NegCtrl1_D.out & cat /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/idba_ud/H20NegCtrl1_D/contig.fa.cap.singlets /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/idba_ud/H20NegCtrl1_D/contig.fa.cap.contigs > /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/cap3/H20NegCtrl1_D/cap3-contigs.faįile "/home/arwa/17_CTOT_Longitudinal/sunbeam/rules/assembly/les", line 48, in _rule_cap3įile "/home/arwa/miniconda3/envs/sunbeam/lib/python3.5/concurrent/futures/thread.Please use the following to spread the word:ĪPA All Acronyms. Microb120:/media/THING2/arwa/17_CTOT_Longitudinal/FilteredFASTQ/PCMP_H20NegCtrl1_D_R*Įrror in job cap3 while creating output file /home/arwa/17_CTOT_Longitudinal/sunbeam_output/assembly/cap3/H20NegCtrl1_D/cap3-contigs.fa.ĬalledProcessError in line 48 of /home/arwa/17_CTOT_Longitudinal/sunbeam/rules/assembly/les: All three isoforms are found in Contig 1 as well, and the Gene Model Checker program verified all splice donor and acceptor sites. An example of a sample that doesn't build contigs with IDBA-UD can be found here: methylguanosine cap binding and other biological processes.